Developer Setup¶
For Python Dev environment setup, check the wiki of respective projects.
SCT ¶
Wiki: https://github.com/neuropoly/spinalcordtoolbox/wiki/Contributing%3A-Installing-SCT-for-development
TensorFlow 1.5 required because https://github.com/neuropoly/spinalcordtoolbox/pull/2618
SCT: https://hub.docker.com/r/neuropoly/sct
Warning
Note: DockerHub not up to date as of 2021-03-08
IvadoMed ¶
Wiki: https://ivadomed.org/en/latest/installation.html
Make sure to read this page from beginning to END, especially the pre-commit hook part for dev as well!
PyTorch 1.6 because: 1.7 soon https://github.com/ivadomed/ivadomed/issues/492
AxonDeepSeg ¶
Wiki: https://github.com/neuropoly/axondeepseg/wiki/Installation-for-development
Shimming Toolbox ¶
Wiki: https://shimming-toolbox.org/en/latest/getting_started/installation.html#development-version