Developer Setup

For Python Dev environment setup, check the wiki of respective projects.

SCT

Wiki: https://github.com/neuropoly/spinalcordtoolbox/wiki/Contributing%3A-Installing-SCT-for-development

Ivadomed

Wiki: https://ivadomed.org/en/latest/installation.html

Make sure to read this page from beginning to END, especially the pre-commit hook part for dev as well!

PyTorch 1.6 because: 1.7 soon https://github.com/ivadomed/ivadomed/issues/492

AxonDeepSeg

Wiki: https://github.com/neuropoly/axondeepseg/wiki/Installation-for-development​

Shimming Toolbox

Wiki: https://shimming-toolbox.org/en/latest/contributing/CONTRIBUTING.html​