FSLeyes#
Introduction#
FSLeyes, which is part of the FMRIB Software Library (FSL), is an image viewer for 3D and 4D neuroimages. It is a commonly used package in the field of neuroimaging, and our lab has several plugins that integrate with FSLeyes.
Installation #
The FSLeyes documentation provides two different install options:
Requirements when running from OSX: XQuartz
Install FSLeyes from conda-forge (this has to be done in a virtual environment) on the remote host (rosenberg or joplin):
conda create --name <YOUR_ENV>
conda activate <YOUR_ENV>
conda install -c conda-forge fsleyes
Running Remotely#
To run FSLeyes remotely, please see the documentation here.
After installing, do an ssh for X forwarding:
ssh -X username@remotehost
conda activate <YOUR_ENV>
fsleyes
If you have an XQuartz error follow the instructions here.
Plugins#
We have several different projects with FSLeyes-integrated plugins: