ITK-SNAP is a software package used to segment structures in 3D medical images.
Create a mesh out of a binary file #
ITK-SNAP allows you to construct a mesh (
.vtk) with a binary mask.
Change the anatomic image:
File -> Open grayscale image
Load the mask:
Segmentation -> Load from image
update meshin the bottom of the window
Record the mesh:
Segmentation -> Export as surface meshand indicate the format as
VTK PolyData File